Package: epiomics 1.1.0

Jesse Goodrich

epiomics: Analysis of Omics Data in Observational Studies

A collection of fast and flexible functions for analyzing omics data in observational studies. Multiple different approaches for integrating multiple environmental/genetic factors, omics data, and/or phenotype data are implemented. This includes functions for performing omics wide association studies with one or more variables of interest as the exposure or outcome; a function for performing a meet in the middle analysis for linking exposures, omics, and outcomes (as described by Chadeau-Hyam et al., (2010) <doi:10.3109/1354750X.2010.533285>); and a function for performing a mixtures analysis across all omics features using quantile-based g-Computation (as described by Keil et al., (2019) <doi:10.1289/EHP5838>).

Authors:Jesse Goodrich [aut, cre]

epiomics_1.1.0.tar.gz
epiomics_1.1.0.zip(r-4.5)epiomics_1.1.0.zip(r-4.4)epiomics_1.1.0.zip(r-4.3)
epiomics_1.1.0.tgz(r-4.4-any)epiomics_1.1.0.tgz(r-4.3-any)
epiomics_1.1.0.tar.gz(r-4.5-noble)epiomics_1.1.0.tar.gz(r-4.4-noble)
epiomics_1.1.0.tgz(r-4.4-emscripten)epiomics_1.1.0.tgz(r-4.3-emscripten)
epiomics.pdf |epiomics.html
epiomics/json (API)
NEWS

# Install 'epiomics' in R:
install.packages('epiomics', repos = c('https://goodrich-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/goodrich-lab/epiomics/issues

Datasets:
  • example_data - Example data with multiple exposures, multiple outcomes,

On CRAN:

3.18 score 1 stars 4 scripts 296 downloads 6 exports 52 dependencies

Last updated 9 months agofrom:be15123a56. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winOKNov 12 2024
R-4.5-linuxOKNov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKNov 12 2024
R-4.3-macOKNov 12 2024

Exports:coef_plot_from_owasmeet_in_middleowasowas_clogitowas_qgcompvolcano_owas

Dependencies:abindarmbootclicodacodetoolscolorspacedata.tabledigestfansifarverfuturefuture.applygenericsggplot2ggrepelglobalsgluegridExtragtableisobandlabelinglatticelifecyclelistenvlme4magrittrMASSMatrixmgcvminqamunsellnlmenloptrnnetparallellypillarpkgconfigpsclqgcompR6RColorBrewerRcppRcppEigenrlangscalessurvivaltibbleutf8vctrsviridisLitewithr